IL_7JQC_091

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGGU*ACUGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_091 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.2722

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7JQC|1|A|C|877
7JQC|1|A|G|878
7JQC|1|A|C|879
7JQC|1|A|G|880
7JQC|1|A|G|881
7JQC|1|A|U|882
*
7JQC|1|A|A|904
7JQC|1|A|C|905
7JQC|1|A|U|906
7JQC|1|A|G|907
7JQC|1|A|A|908
7JQC|1|A|G|909

Current chains

Chain A

rRNA

Nearby chains

Chain O

uS17