IL_7JQC_093

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_093 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.1469

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7JQC|1|A|G|928
7JQC|1|A|G|929
7JQC|1|A|C|930
7JQC|1|A|C|931
*
7JQC|1|A|G|1010
7JQC|1|A|A|1011
7JQC|1|A|A|1012
7JQC|1|A|U|1013

Current chains

Chain A

rRNA

Nearby chains

Chain C

eS1

Chain P

uS15

Chain e

eS27