IL_7JQC_105
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 7JQC|1|A|C|1215, 7JQC|1|A|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQC_105 not in the Motif Atlas
- Homologous match to IL_8P9A_431
- Geometric discrepancy: 0.1625
- The information below is about IL_8P9A_431
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
7JQC|1|A|A|1214
7JQC|1|A|C|1215
7JQC|1|A|C|1216
7JQC|1|A|A|1217
*
7JQC|1|A|U|1681
7JQC|1|A|C|1682
7JQC|1|A|C|1683
7JQC|1|A|C|1684
7JQC|1|A|U|1685
Current chains
- Chain A
- rRNA
Nearby chains
- Chain G
- uS7
- Chain R
- Uncharacterized protein
- Chain V
- uS10
- Chain b
- 40S ribosomal protein S26
- Chain d
- eS28
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