IL_7JQC_106

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7JQC|1|A|C|1403, 7JQC|1|A|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_106 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.3234

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

7JQC|1|A|A|1402
7JQC|1|A|C|1403
7JQC|1|A|U|1404
7JQC|1|A|A|1405
*
7JQC|1|A|U|1441
7JQC|1|A|U|1442
7JQC|1|A|C|1443
7JQC|1|A|U|1444

Current chains

Chain A

rRNA

Nearby chains

Chain R

Uncharacterized protein

Chain V

uS10

Chain h

RACK1