IL_7JQL_075
3D structure
- PDB id
- 7JQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 7JQL|1|1A|A|1938, 7JQL|1|1A|C|1941, 7JQL|1|1A|U|1944, 7JQL|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQL_075 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1247
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
7JQL|1|1A|C|1934
7JQL|1|1A|G|1935
7JQL|1|1A|A|1936
7JQL|1|1A|A|1937
7JQL|1|1A|A|1938
7JQL|1|1A|5MU|1939
7JQL|1|1A|U|1940
7JQL|1|1A|C|1941
7JQL|1|1A|5MC|1942
7JQL|1|1A|U|1943
7JQL|1|1A|U|1944
7JQL|1|1A|G|1945
*
7JQL|1|1A|C|1961
7JQL|1|1A|5MC|1962
7JQL|1|1A|U|1963
7JQL|1|1A|G|1964
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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