IL_7JQL_083

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_083 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.328

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7JQL|1|1A|G|2110
7JQL|1|1A|C|2111
7JQL|1|1A|G|2112
7JQL|1|1A|U|2113
7JQL|1|1A|A|2114
7JQL|1|1A|G|2115
7JQL|1|1A|G|2116
7JQL|1|1A|A|2117
7JQL|1|1A|U|2118
7JQL|1|1A|A|2119
7JQL|1|1A|G|2120
*
7JQL|1|1A|C|2178
7JQL|1|1A|C|2179

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains