IL_7JQL_084

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3592

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7JQL|1|1A|G|2124
7JQL|1|1A|G|2125
7JQL|1|1A|A|2126
7JQL|1|1A|G|2127
*
7JQL|1|1A|C|2161
7JQL|1|1A|G|2162
7JQL|1|1A|C|2163
7JQL|1|1A|C|2164
7JQL|1|1A|G|2165
7JQL|1|1A|G|2166
7JQL|1|1A|U|2167
7JQL|1|1A|G|2168
7JQL|1|1A|A|2169
7JQL|1|1A|A|2170
7JQL|1|1A|A|2171
7JQL|1|1A|U|2172
7JQL|1|1A|A|2173
7JQL|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains