3D structure

PDB id
7JQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAAAGAC*GGGGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JQL_139 not in the Motif Atlas
Homologous match to IL_4LFB_026
Geometric discrepancy: 0.2531
The information below is about IL_4LFB_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7JQL|1|1a|U|605
7JQL|1|1a|G|606
7JQL|1|1a|A|607
7JQL|1|1a|A|608
7JQL|1|1a|A|609
7JQL|1|1a|G|610
7JQL|1|1a|A|611
7JQL|1|1a|C|612
*
7JQL|1|1a|G|628
7JQL|1|1a|G|629
7JQL|1|1a|G|630
7JQL|1|1a|G|631
7JQL|1|1a|A|632
7JQL|1|1a|G|633

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1d
30S ribosomal protein S4
Chain 1h
30S ribosomal protein S8
Chain 1p
30S ribosomal protein S16
Chain 1q
30S ribosomal protein S17

Coloring options:


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