IL_7JQL_191

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7JQL|1|2A|G|801, 7JQL|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_191 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0642

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7JQL|1|2A|G|674
7JQL|1|2A|A|675
7JQL|1|2A|A|676
7JQL|1|2A|A|677
7JQL|1|2A|C|678
*
7JQL|1|2A|G|799
7JQL|1|2A|A|800
7JQL|1|2A|G|801
7JQL|1|2A|A|802
7JQL|1|2A|U|803
7JQL|1|2A|A|804
7JQL|1|2A|G|805
7JQL|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15