IL_7JQL_230

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

7JQL|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_230 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1035

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7JQL|1|2A|G|1526
7JQL|1|2A|G|1527
7JQL|1|2A|A|1528
7JQL|1|2A|A|1528|||A
7JQL|1|2A|G|1529
*
7JQL|1|2A|U|1540
7JQL|1|2A|G|1541
7JQL|1|2A|A|1542
7JQL|1|2A|C|1543
7JQL|1|2A|A|1544
7JQL|1|2A|A|1545
7JQL|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains