IL_7JQL_294

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

7JQL|1|2a|U|244, 7JQL|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_294 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.121

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

7JQL|1|2a|C|242
7JQL|1|2a|A|243
7JQL|1|2a|U|244
7JQL|1|2a|C|245
7JQL|1|2a|A|246
7JQL|1|2a|G|247
*
7JQL|1|2a|C|277
7JQL|1|2a|G|278
7JQL|1|2a|A|279
7JQL|1|2a|C|280
7JQL|1|2a|G|281
7JQL|1|2a|A|282
7JQL|1|2a|C|283
7JQL|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17