IL_7JQL_358

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAUC*GAUAG

Length

11 nucleotides

Bulged bases

7JQL|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_358 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3641

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7JQL|1|2A|C|280
7JQL|1|2A|G|281
7JQL|1|2A|A|282
7JQL|1|2A|A|283
7JQL|1|2A|U|284
7JQL|1|2A|C|285
*
7JQL|1|2A|G|356
7JQL|1|2A|A|357
7JQL|1|2A|U|358
7JQL|1|2A|A|359
7JQL|1|2A|G|360

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains