IL_7JQL_360

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

7JQL|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_360 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.109

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7JQL|1|2A|C|844
7JQL|1|2A|G|845
7JQL|1|2A|C|846
7JQL|1|2A|U|847
7JQL|1|2A|G|848
7JQL|1|2A|A|849
7JQL|1|2A|C|850
*
7JQL|1|2A|G|927
7JQL|1|2A|G|928
7JQL|1|2A|U|930
7JQL|1|2A|G|931
7JQL|1|2A|G|932
7JQL|1|2A|A|933
7JQL|1|2A|G|934

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30