IL_7JQL_388

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAGAC*GGGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_388 not in the Motif Atlas

Homologous match to IL_6CZR_408

Geometric discrepancy: 0.2293

The information below is about IL_6CZR_408

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7JQL|1|2a|U|605
7JQL|1|2a|G|606
7JQL|1|2a|A|607
7JQL|1|2a|A|608
7JQL|1|2a|A|609
7JQL|1|2a|G|610
7JQL|1|2a|A|611
7JQL|1|2a|C|612
*
7JQL|1|2a|G|628
7JQL|1|2a|G|629
7JQL|1|2a|G|630
7JQL|1|2a|G|631
7JQL|1|2a|A|632
7JQL|1|2a|G|633

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2h

30S ribosomal protein S8

Chain 2p

30S ribosomal protein S16