IL_7JQM_083

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQM_083 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3664

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7JQM|1|1A|G|2124
7JQM|1|1A|G|2125
7JQM|1|1A|A|2126
7JQM|1|1A|G|2127
*
7JQM|1|1A|C|2161
7JQM|1|1A|G|2162
7JQM|1|1A|C|2163
7JQM|1|1A|C|2164
7JQM|1|1A|G|2165
7JQM|1|1A|G|2166
7JQM|1|1A|U|2167
7JQM|1|1A|G|2168
7JQM|1|1A|A|2169
7JQM|1|1A|A|2170
7JQM|1|1A|A|2171
7JQM|1|1A|U|2172
7JQM|1|1A|A|2173
7JQM|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains