IL_7JQM_186

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

7JQM|1|2A|U|504, 7JQM|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQM_186 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0743

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7JQM|1|2A|G|481
7JQM|1|2A|A|482
7JQM|1|2A|A|483
7JQM|1|2A|C|484
*
7JQM|1|2A|G|496
7JQM|1|2A|A|497
7JQM|1|2A|G|498
7JQM|1|2A|U|499
7JQM|1|2A|G|500
7JQM|1|2A|A|501
7JQM|1|2A|A|502
7JQM|1|2A|A|503
7JQM|1|2A|U|504
7JQM|1|2A|A|505
7JQM|1|2A|G|506
7JQM|1|2A|A|507
7JQM|1|2A|G|508
7JQM|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24