IL_7JQM_301

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQM_301 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1096

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7JQM|1|2a|G|450
7JQM|1|2a|A|451
7JQM|1|2a|A|452
7JQM|1|2a|A|453
7JQM|1|2a|C|454
7JQM|1|2a|C|455
*
7JQM|1|2a|G|476
7JQM|1|2a|A|477
7JQM|1|2a|C|479
7JQM|1|2a|U|480
7JQM|1|2a|G|481
7JQM|1|2a|A|482
7JQM|1|2a|C|483

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16