IL_7JRR_002

3D structure

PDB id

7JRR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of artificially designed homomeric RNA nanoarchitectures

Experimental method

X-RAY DIFFRACTION

Resolution

2.16 Å

Loop

Sequence

GGGAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

7JRR|1|A|A|26||||7_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JRR_002 not in the Motif Atlas

Geometric match to IL_7JRR_001

Geometric discrepancy: 0.0001

The information below is about IL_7JRR_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7JRR|1|A|G|5||||7_555
7JRR|1|A|G|6||||7_555
7JRR|1|A|G|7||||7_555
7JRR|1|A|A|8||||7_555
7JRR|1|A|G|9||||7_555
*
7JRR|1|A|C|23||||7_555
7JRR|1|A|G|24||||7_555
7JRR|1|A|A|25||||7_555
7JRR|1|A|A|26||||7_555
7JRR|1|A|G|27||||7_555
7JRR|1|A|A|28||||7_555
7JRR|1|A|A|29||||7_555
7JRR|1|A|C|30||||7_555

Current chains

Chain A

RNA (50-MER)

Nearby chains