3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_007 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.1241
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

7JSS|1|1|C|239
7JSS|1|1|C|240
7JSS|1|1|A|241
7JSS|1|1|G|242
7JSS|1|1|U|243
7JSS|1|1|A|244
7JSS|1|1|G|245
*
7JSS|1|1|C|253
7JSS|1|1|G|254
7JSS|1|1|A|255
7JSS|1|1|A|256
7JSS|1|1|C|257
7JSS|1|1|G|258

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain l
50S ribosomal protein L15

Coloring options:


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