IL_7JSS_016

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7JSS|1|1|G|801, 7JSS|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1116

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7JSS|1|1|G|674
7JSS|1|1|A|675
7JSS|1|1|A|676
7JSS|1|1|A|677
7JSS|1|1|C|678
*
7JSS|1|1|G|799
7JSS|1|1|A|800
7JSS|1|1|G|801
7JSS|1|1|A|802
7JSS|1|1|U|803
7JSS|1|1|A|804
7JSS|1|1|G|805
7JSS|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15