IL_7JSS_034

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_034 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.111

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7JSS|1|1|U|1004
7JSS|1|1|C|1005
7JSS|1|1|C|1006
7JSS|1|1|C|1007
7JSS|1|1|A|1008
7JSS|1|1|A|1009
7JSS|1|1|A|1010
7JSS|1|1|G|1011
*
7JSS|1|1|C|1150
7JSS|1|1|A|1151

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20