IL_7JSS_045

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7JSS|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_045 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.141

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7JSS|1|1|C|1208
7JSS|1|1|U|1209
7JSS|1|1|G|1210
7JSS|1|1|C|1211
7JSS|1|1|G|1212
7JSS|1|1|A|1213
7JSS|1|1|A|1214
7JSS|1|1|G|1215
*
7JSS|1|1|U|1234
7JSS|1|1|G|1235
7JSS|1|1|G|1236
7JSS|1|1|A|1237
7JSS|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20