IL_7JSS_054

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

7JSS|1|1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_054 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.2256

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7JSS|1|1|C|1437
7JSS|1|1|U|1438
7JSS|1|1|A|1439
7JSS|1|1|U|1440
*
7JSS|1|1|A|1551
7JSS|1|1|A|1552
7JSS|1|1|A|1553
7JSS|1|1|U|1554
7JSS|1|1|G|1555

Current chains

Chain 1

23S ribosomal RNA

Nearby chains