3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_091 not in the Motif Atlas
Homologous match to IL_7A0S_087
Geometric discrepancy: 0.2603
The information below is about IL_7A0S_087
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7JSS|1|1|C|2466
7JSS|1|1|C|2467
7JSS|1|1|A|2468
7JSS|1|1|A|2469
7JSS|1|1|G|2470
*
7JSS|1|1|C|2480
7JSS|1|1|G|2481
7JSS|1|1|A|2482
7JSS|1|1|C|2483
7JSS|1|1|G|2484

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 8
Peptidyl-tRNA hydrolase ArfB
Chain F
50S ribosomal protein L36
Chain m
50S ribosomal protein L16

Coloring options:


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