IL_7JSS_142

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_142 not in the Motif Atlas

Homologous match to IL_6CZR_139

Geometric discrepancy: 0.1604

The information below is about IL_6CZR_139

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.6

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

28

Unit IDs

7JSS|1|3|G|654
7JSS|1|3|A|655
*
7JSS|1|3|U|751
7JSS|1|3|G|752
7JSS|1|3|A|753
7JSS|1|3|C|754

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S8

Chain T

30S ribosomal protein S15