3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_169 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1263
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

7JSS|1|3|G|1401
7JSS|1|3|C|1402
7JSS|1|3|C|1403
7JSS|1|3|C|1404
*
7JSS|1|3|G|1497
7JSS|1|3|U|1498
7JSS|1|3|A|1499
7JSS|1|3|A|1500
7JSS|1|3|C|1501

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain 5
Transfer RNA; tRNA
Chain 8
Peptidyl-tRNA hydrolase ArfB

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1024 s