IL_7JSS_185

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1623

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7JSS|1|1|U|1851
7JSS|1|1|U|1852
7JSS|1|1|A|1853
7JSS|1|1|A|1854
7JSS|1|1|U|1855
7JSS|1|1|U|1856
7JSS|1|1|G|1857
7JSS|1|1|A|1858
7JSS|1|1|U|1859
7JSS|1|1|G|1860
*
7JSS|1|1|U|1882
7JSS|1|1|U|1883
7JSS|1|1|G|1884
7JSS|1|1|A|1885
7JSS|1|1|U|1886
7JSS|1|1|C|1887
7JSS|1|1|G|1888
7JSS|1|1|A|1889
7JSS|1|1|A|1890
7JSS|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains