IL_7JSS_186
3D structure
- PDB id
- 7JSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGG*CGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JSS_186 not in the Motif Atlas
- Homologous match to IL_5J7L_006
- Geometric discrepancy: 0.3612
- The information below is about IL_5J7L_006
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
7JSS|1|3|C|67
7JSS|1|3|G|68
7JSS|1|3|G|69
*
7JSS|1|3|C|99
7JSS|1|3|G|100
7JSS|1|3|A|101
7JSS|1|3|G|102
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
Coloring options: