3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSW_006 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.1206
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7JSW|1|1|G|188
7JSW|1|1|G|189
7JSW|1|1|A|190
7JSW|1|1|A|191
7JSW|1|1|C|192
7JSW|1|1|U|193
7JSW|1|1|G|194
*
7JSW|1|1|C|201
7JSW|1|1|U|202
7JSW|1|1|A|203
7JSW|1|1|A|204
7JSW|1|1|G|205
7JSW|1|1|U|206
7JSW|1|1|A|207
7JSW|1|1|C|208

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L15
Chain x
50S ribosomal protein L28

Coloring options:


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