IL_7JSW_058

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGG*CCG

Length

7 nucleotides

Bulged bases

7JSW|1|1|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_058 not in the Motif Atlas

Geometric match to IL_4V88_457

Geometric discrepancy: 0.3871

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7JSW|1|1|C|1489
7JSW|1|1|A|1490
7JSW|1|1|G|1491
7JSW|1|1|G|1492
*
7JSW|1|1|C|1498
7JSW|1|1|C|1499
7JSW|1|1|G|1500

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2