3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
7JSW|1|1|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSW_063 not in the Motif Atlas
Geometric match to IL_4WF9_065
Geometric discrepancy: 0.1243
The information below is about IL_4WF9_065
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

7JSW|1|1|A|1669
7JSW|1|1|C|1670
7JSW|1|1|U|1671
7JSW|1|1|A|1672
7JSW|1|1|G|1673
7JSW|1|1|G|1674
*
7JSW|1|1|C|1990
7JSW|1|1|U|1991
7JSW|1|1|G|1992
7JSW|1|1|U|1993

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14

Coloring options:


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