IL_7JSW_064

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7JSW|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_064 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1007

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|C|1686
7JSW|1|1|G|1687
7JSW|1|1|U|1688
7JSW|1|1|A|1689
7JSW|1|1|A|1690
7JSW|1|1|C|1691
*
7JSW|1|1|G|1696
7JSW|1|1|G|1697
7JSW|1|1|A|1698
7JSW|1|1|G|1699
7JSW|1|1|A|1700
7JSW|1|1|A|1701
7JSW|1|1|G|1702

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2