3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CA*UACG
Length
6 nucleotides
Bulged bases
7JSW|1|1|A|2572, 7JSW|1|1|C|2573
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSW_091 not in the Motif Atlas
Homologous match to IL_5J7L_341
Geometric discrepancy: 0.0888
The information below is about IL_5J7L_341
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

7JSW|1|1|C|2512
7JSW|1|1|A|2513
*
7JSW|1|1|U|2571
7JSW|1|1|A|2572
7JSW|1|1|C|2573
7JSW|1|1|G|2574

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13

Coloring options:


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