3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUAGAG*UGGAC
Length
11 nucleotides
Bulged bases
7JSW|1|3|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSW_142 not in the Motif Atlas
Geometric match to IL_8D29_010
Geometric discrepancy: 0.3591
The information below is about IL_8D29_010
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

7JSW|1|3|G|661
7JSW|1|3|U|662
7JSW|1|3|A|663
7JSW|1|3|G|664
7JSW|1|3|A|665
7JSW|1|3|G|666
*
7JSW|1|3|U|740
7JSW|1|3|G|741
7JSW|1|3|G|742
7JSW|1|3|A|743
7JSW|1|3|C|744

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S6
Chain T
30S ribosomal protein S15
Chain W
30S ribosomal protein S18

Coloring options:


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