IL_7JSW_148

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7JSW|1|3|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_148 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.144

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7JSW|1|3|G|922
7JSW|1|3|A|923
*
7JSW|1|3|U|1393
7JSW|1|3|A|1394
7JSW|1|3|C|1395

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S5