IL_7JSW_185

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAA*UACUC

Length

8 nucleotides

Bulged bases

7JSW|1|1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_185 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.4926

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JSW|1|1|G|2069
7JSW|1|1|A|2070
7JSW|1|1|A|2071
*
7JSW|1|1|U|2438
7JSW|1|1|A|2439
7JSW|1|1|C|2440
7JSW|1|1|U|2441
7JSW|1|1|C|2442

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain d

50S ribosomal protein L4