IL_7JSZ_103

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_103 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1111

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7JSZ|1|1|G|2737
7JSZ|1|1|A|2738
7JSZ|1|1|U|2739
7JSZ|1|1|A|2740
7JSZ|1|1|A|2741
7JSZ|1|1|G|2742
*
7JSZ|1|1|C|2762
7JSZ|1|1|G|2763
7JSZ|1|1|A|2764
7JSZ|1|1|A|2765
7JSZ|1|1|A|2766
7JSZ|1|1|C|2767

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13