IL_7JSZ_128

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_128 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1718

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7JSZ|1|3|G|292
7JSZ|1|3|G|293
*
7JSZ|1|3|U|304
7JSZ|1|3|G|305
7JSZ|1|3|A|306
7JSZ|1|3|C|307
7JSZ|1|3|C|308

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16