IL_7JSZ_135

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSZ_135 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.3845

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7JSZ|1|3|G|450
7JSZ|1|3|A|451
7JSZ|1|3|A|452
7JSZ|1|3|G|453
7JSZ|1|3|G|454
7JSZ|1|3|G|455
*
7JSZ|1|3|C|477
7JSZ|1|3|A|478
7JSZ|1|3|U|479
7JSZ|1|3|U|480
7JSZ|1|3|G|481
7JSZ|1|3|A|482
7JSZ|1|3|C|483

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16