IL_7JT1_016

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7JT1|1|1|G|801, 7JT1|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT1_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1336

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7JT1|1|1|G|674
7JT1|1|1|A|675
7JT1|1|1|A|676
7JT1|1|1|A|677
7JT1|1|1|C|678
*
7JT1|1|1|G|799
7JT1|1|1|A|800
7JT1|1|1|G|801
7JT1|1|1|A|802
7JT1|1|1|U|803
7JT1|1|1|A|804
7JT1|1|1|G|805
7JT1|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15