IL_7JT1_184

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT1_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7JT1|1|1|U|1851
7JT1|1|1|U|1852
7JT1|1|1|A|1853
7JT1|1|1|A|1854
7JT1|1|1|U|1855
7JT1|1|1|U|1856
7JT1|1|1|G|1857
7JT1|1|1|A|1858
7JT1|1|1|U|1859
7JT1|1|1|G|1860
*
7JT1|1|1|U|1882
7JT1|1|1|U|1883
7JT1|1|1|G|1884
7JT1|1|1|A|1885
7JT1|1|1|U|1886
7JT1|1|1|C|1887
7JT1|1|1|G|1888
7JT1|1|1|A|1889
7JT1|1|1|A|1890
7JT1|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains