IL_7JT2_045

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7JT2|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_045 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1149

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7JT2|1|1|C|1208
7JT2|1|1|U|1209
7JT2|1|1|G|1210
7JT2|1|1|C|1211
7JT2|1|1|G|1212
7JT2|1|1|A|1213
7JT2|1|1|A|1214
7JT2|1|1|G|1215
*
7JT2|1|1|U|1234
7JT2|1|1|G|1235
7JT2|1|1|G|1236
7JT2|1|1|A|1237
7JT2|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20