IL_7JT2_094
3D structure
- PDB id
- 7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB bound in the A site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUC*GCGAG
- Length
- 8 nucleotides
- Bulged bases
- 7JT2|1|1|G|2576, 7JT2|1|1|A|2577
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JT2_094 not in the Motif Atlas
- Geometric match to IL_5J7L_340
- Geometric discrepancy: 0.1164
- The information below is about IL_5J7L_340
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7JT2|1|1|C|2510
7JT2|1|1|U|2511
7JT2|1|1|C|2512
*
7JT2|1|1|G|2574
7JT2|1|1|C|2575
7JT2|1|1|G|2576
7JT2|1|1|A|2577
7JT2|1|1|G|2578
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Peptidyl-tRNA hydrolase ArfB
- Chain B
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L3
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