IL_7JT2_133

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_133 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.3815

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7JT2|1|3|C|440
7JT2|1|3|A|441
7JT2|1|3|G|442
*
7JT2|1|3|C|492
7JT2|1|3|A|493
7JT2|1|3|G|494
7JT2|1|3|A|495
7JT2|1|3|A|496
7JT2|1|3|G|497

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4