IL_7JT2_135
3D structure
- PDB id
- 7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB bound in the A site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JT2_135 not in the Motif Atlas
- Geometric match to IL_5J7L_023
- Geometric discrepancy: 0.3238
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7JT2|1|3|G|450
7JT2|1|3|A|451
7JT2|1|3|A|452
7JT2|1|3|G|453
7JT2|1|3|G|454
7JT2|1|3|G|455
*
7JT2|1|3|C|477
7JT2|1|3|A|478
7JT2|1|3|U|479
7JT2|1|3|U|480
7JT2|1|3|G|481
7JT2|1|3|A|482
7JT2|1|3|C|483
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
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