3D structure

PDB id
7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome stalled on long mRNA with ArfB bound in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AGAAUU*AGGAAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT2_146 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.0895
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

7JT2|1|3|A|673
7JT2|1|3|G|674
7JT2|1|3|A|675
7JT2|1|3|A|676
7JT2|1|3|U|677
7JT2|1|3|U|678
*
7JT2|1|3|A|712
7JT2|1|3|G|713
7JT2|1|3|G|714
7JT2|1|3|A|715
7JT2|1|3|A|716
7JT2|1|3|U|717

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S6
Chain P
30S ribosomal protein S11
Chain W
30S ribosomal protein S18
Chain Z
30S ribosomal protein S21
Chain b
50S ribosomal protein L2

Coloring options:


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