IL_7JT2_184

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT2_184 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1358

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7JT2|1|1|U|1851
7JT2|1|1|U|1852
7JT2|1|1|A|1853
7JT2|1|1|A|1854
7JT2|1|1|U|1855
7JT2|1|1|U|1856
7JT2|1|1|G|1857
7JT2|1|1|A|1858
7JT2|1|1|U|1859
7JT2|1|1|G|1860
*
7JT2|1|1|U|1882
7JT2|1|1|U|1883
7JT2|1|1|G|1884
7JT2|1|1|A|1885
7JT2|1|1|U|1886
7JT2|1|1|C|1887
7JT2|1|1|G|1888
7JT2|1|1|A|1889
7JT2|1|1|A|1890
7JT2|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains