IL_7JT3_085

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_085 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.1432

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7JT3|1|1|C|2350
7JT3|1|1|G|2351
7JT3|1|1|A|2352
7JT3|1|1|G|2353
*
7JT3|1|1|C|2364
7JT3|1|1|G|2365
7JT3|1|1|A|2366
7JT3|1|1|G|2367

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L35

Chain o

50S ribosomal protein L18

Chain w

50S ribosomal protein L27