3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_091 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.181
The information below is about IL_5J7L_338
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7JT3|1|1|C|2466
7JT3|1|1|C|2467
7JT3|1|1|A|2468
7JT3|1|1|A|2469
7JT3|1|1|G|2470
*
7JT3|1|1|C|2480
7JT3|1|1|G|2481
7JT3|1|1|A|2482
7JT3|1|1|C|2483
7JT3|1|1|G|2484

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 8
Peptidyl-tRNA hydrolase ArfB
Chain F
50S ribosomal protein L36
Chain m
50S ribosomal protein L16

Coloring options:


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