3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
7JT3|1|3|U|485
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_133 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.1781
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

7JT3|1|3|G|446
7JT3|1|3|G|447
7JT3|1|3|A|448
7JT3|1|3|G|449
7JT3|1|3|G|450
*
7JT3|1|3|C|483
7JT3|1|3|G|484
7JT3|1|3|U|485
7JT3|1|3|U|486
7JT3|1|3|A|487
7JT3|1|3|C|488

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain U
30S ribosomal protein S16

Coloring options:


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